Noah Haeske Mechanical Engineering

← Research  /  Project 02

Lateral Filter Array Microfluidics for Circulating Tumor Cell Isolation

There are a handful of tumor cells in a tube of blood containing billions of everything else. Finding them is a separation problem, and the geometry of the channel is what does the separating.

Principal Investigator
Prof. Z. Hugh Fan
Institution
University of Florida
Department
Mechanical & Aerospace Engineering
Group
Interdisciplinary Microsystems Group
Affiliation
Aug 2025 – present

Research focus

Circulating tumor cells are shed into the bloodstream by solid tumors, and capturing them from a routine blood draw offers a route to cancer diagnosis and monitoring that does not require a biopsy. The difficulty is abundance: the target cells are vanishingly rare against a background of red and white blood cells, so any capture method has to be both highly selective and gentle enough that the cells survive to be analysed.

The lateral filter array microfluidic device addresses this with geometry. A serpentine main channel carries the bulk of the sample while an array of side filters, sized between the diameters of a blood cell and a tumor cell, traps the larger cells off the main flow path. Because the filters sit lateral to the flow rather than across it, the device resists the clogging that limits conventional membrane filtration. My work concerns the relationship between that geometry and how well it actually captures, and pairs the physical separation with the chemistry that has to happen downstream.

My responsibilities

I built a COMSOL model of the microfilter array relating channel size and volumetric flow rate to capture efficiency, so that a device could be designed toward a target rather than found by iteration. I then fabricated and tested more than 200 microfluidic devices to validate that model, working through mask design, soft lithography, and fluorescence microscopy for readout, and cross-checking predicted against measured capture using clinical samples supplied by UF Health Shands Hospital.

Alongside the CTC work I am designing a low-cost platform for sequential reagent release using microfluidic ball valves. The goal is to run chemical lysis, RNA enrichment, and nucleic acid amplification as an ordered sequence inside a single device, enabling multiplexed detection of HIV, dengue, and Zika without an operator pipetting between steps. It is the same instinct as my work in London: replace a procedure that currently requires a trained hand with something the device does by itself.

Media

The device and the data.

Lateral filter array microfluidic device filled with red dye on a glass slide, a penny beside it for scale
Fig. 1  A lateral filter array device, dye-filled to make the channel network visible, with a penny for scale. The serpentine main channel carries the bulk of the sample; the fine comb structures branching off it are the filter arrays where larger cells are trapped off the flow path.
Fluorescence microscopy panels showing a captured cell positive for panCK and CSV-FITC and negative for CD45, alongside a CD45-positive leukocyte
Fig. 2  Immunofluorescence readout distinguishing a captured tumor cell from a leukocyte. A is DAPI-positive and panCK/CSV-FITC-positive but CD45-negative, the signature of a circulating tumor cell. B is CD45-positive, identifying a white blood cell that made it through the filter. Deciding between these two on every captured object is what makes capture efficiency a number worth measuring.
Diagram of the sequential reagent release platform: buffer wells with ball valves above a mixing unit and paper detection unit, plus the portable heater and microscope stand
Fig. 3  The sequential reagent release platform. a Four buffer wells, each sealed by a bearing ball, sit above a mixing unit and a layered paper detection unit. b A pin displaces the ball and opens a gap, releasing one reagent at a time in a fixed order. c The portable reader: heater, integrated circuit, batteries, and a microscope on a 3D-printed stand, sized to run the assay away from a lab bench.

Methods & tools

What the work actually involves.

Modelling
COMSOL Multiphysics
Fabrication
Mask design, soft lithography
Readout
Fluorescence microscopy, ImageJ
Validation
Clinical samples, UF Health Shands

The volume of devices matters more than it might sound. A capture-efficiency model is only worth having if it survives contact with real fabrication variation, and the only way to know that is to build enough devices that the spread is visible. Two hundred devices is where the difference between a model that predicts and a model that describes started to become obvious.

Contact

Questions about this project?

Email
noah.haeske@ufl.edu
Phone
407-705-9895
Resume
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