Noah Haeske Mechanical Engineering

← Research  /  Project 02

Lateral Filter Array Microfluidics for Circulating Tumor Cell Isolation

There are a handful of tumor cells in a tube of blood containing billions of everything else. Finding them is a separation problem, and the geometry of the channel is what does the separating.

Principal Investigator
Prof. Z. Hugh Fan
Institution
University of Florida
Department
Mechanical & Aerospace Engineering
Group
Interdisciplinary Microsystems Group
Affiliation
Aug 2025 – present

Research focus

Circulating tumor cells are shed into the bloodstream by solid tumors, and capturing them from a routine blood draw offers a route to cancer diagnosis and monitoring that does not require a biopsy. The difficulty is abundance: the target cells are vanishingly rare against a background of red and white blood cells, so any capture method has to be both highly selective and gentle enough that the cells survive to be analysed.

The lateral filter array microfluidic device addresses this with geometry. A serpentine main channel carries the bulk of the sample while an array of side filters, sized between the diameters of a blood cell and a tumor cell, traps the larger cells off the main flow path. Because the filters sit lateral to the flow rather than across it, the device resists the clogging that limits conventional membrane filtration. My work concerns the relationship between that geometry and how well it actually captures, and pairs the physical separation with the chemistry that has to happen downstream.

My responsibilities

I built a COMSOL model of the microfilter array relating channel size and volumetric flow rate to capture efficiency, so that a device could be designed toward a target rather than found by iteration. I then fabricated and tested more than 200 microfluidic devices to validate that model, working through mask design, soft lithography, and fluorescence microscopy for readout, and cross-checking predicted against measured capture using clinical samples supplied by UF Health Shands Hospital.

Device and data

Lateral filter array microfluidic device filled with red dye on a glass slide, a penny beside it for scale
Fig. 1  A lateral filter array device, dye-filled to make the channel network visible, with a penny for scale. The serpentine main channel carries the bulk of the sample; the fine comb structures branching off it are the filter arrays where larger cells are trapped off the flow path.
Fluorescence microscopy panels showing a captured cell positive for panCK and CSV-FITC and negative for CD45, alongside a CD45-positive leukocyte
Fig. 2  Immunofluorescence readout distinguishing a captured tumor cell from a leukocyte. A is DAPI-positive and panCK/CSV-FITC-positive but CD45-negative, the signature of a circulating tumor cell. B is CD45-positive, identifying a white blood cell that made it through the filter. Deciding between these two on every captured object is what makes capture efficiency a number worth measuring.

Methods

Modelling
COMSOL Multiphysics
Fabrication
Mask design, soft lithography
Readout
Fluorescence microscopy, ImageJ
Validation
Clinical samples, UF Health Shands